Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02793.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1468
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:1265 original size:4 final size:4

Alignment explanation


    Indices: 1249--1282  Score: 50
    Period size: 4  Copynumber: 8.2  Consensus size: 4

       1239 ATATGGACAC

                                            *         
       1249 ATGT ATGT AATGT ATGT ATGT ATGT ACGT ATGT A
          1 ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT A

       1283 CATATGTGAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
   4   23  0.85
   5    4  0.15

ACGTcount: A:0.29, C:0.03, G:0.24, T:0.44


Consensus pattern (4 bp):   
ATGT

Done.