Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02793.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1368
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:1165 original size:4 final size:4

Alignment explanation


    Indices: 1149--1182  Score: 50
    Period size: 4  Copynumber: 8.2  Consensus size: 4

       1139 ATATGGACAC

                                            *         
       1149 ATGT ATGT AATGT ATGT ATGT ATGT ACGT ATGT A
          1 ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT A

       1183 CATATGTGAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
   4   23  0.85
   5    4  0.15

ACGTcount: A:0.29, C:0.03, G:0.24, T:0.44


Consensus pattern (4 bp):   
ATGT

Done.