Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02801.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3086
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:2965 original size:25 final size:25

Alignment explanation


    Indices: 2937--2987  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2927 GAAGATTAAT

                                     
       2937 CTGGTTCTGCTCGAGGGCAACTGTG
          1 CTGGTTCTGCTCGAGGGCAACTGTG

                                     
       2962 CTGGTTCTGCTCGAGGGCAACTGTG
          1 CTGGTTCTGCTCGAGGGCAACTGTG

             
       2987 C
          1 C

       2988 ACTTCAGTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.12, C:0.25, G:0.35, T:0.27


Consensus pattern (25 bp):   
CTGGTTCTGCTCGAGGGCAACTGTG
Done.