Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02804.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 823
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30


Found at i:57 original size:2 final size:2

Alignment explanation


    Indices: 52--102  Score: 102
    Period size: 2  Copynumber: 25.5  Consensus size: 2

         42 TCCTCTCTCT

                                                                          
         52 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

                         
         94 CA CA CA CA C
          1 CA CA CA CA C

        103 GCATACACTG


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   49  1.00

ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00


Consensus pattern (2 bp):   
CA

Done.