Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02809.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3515
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35


Found at i:212 original size:99 final size:99

Alignment explanation


    Indices: 41--251  Score: 395
    Period size: 99  Copynumber: 2.1  Consensus size: 99

         31 CTAAATTTCT

                 *                                                           
         41 ACCGTTCATTTCATTCTATGTCGGCTTTGGTCTCGTATAACGGTCTTCCCCGCAGTCTCTGATCC
          1 ACCGTCCATTTCATTCTATGTCGGCTTTGGTCTCGTATAACGGTCTTCCCCGCAGTCTCTGATCC

                      *                       
        106 TATGCATTCGGAATGCGGTACTCCTTTGATCTCC
         66 TATGCATTCGAAATGCGGTACTCCTTTGATCTCC

                                                                             
        140 ACCGTCCATTTCATTCTATGTCGGCTTTGGTCTCGTATAACGGTCTTCCCCGCAGTCTCTGATCC
          1 ACCGTCCATTTCATTCTATGTCGGCTTTGGTCTCGTATAACGGTCTTCCCCGCAGTCTCTGATCC

             *                                
        205 TTTGCATTCGAAATGCGGTACTCCTTTGATCTCC
         66 TATGCATTCGAAATGCGGTACTCCTTTGATCTCC

                         
        239 ACCGTCCATTTCA
          1 ACCGTCCATTTCA

        252 AACGACAGTT


Statistics
Matches: 109,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  99  109  1.00

ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36


Consensus pattern (99 bp):   
ACCGTCCATTTCATTCTATGTCGGCTTTGGTCTCGTATAACGGTCTTCCCCGCAGTCTCTGATCC
TATGCATTCGAAATGCGGTACTCCTTTGATCTCC
Done.