Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02813.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7992
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:670 original size:9 final size:9

Alignment explanation


    Indices: 656--696  Score: 55
    Period size: 9  Copynumber: 4.6  Consensus size: 9

        646 TGATTCGGTG

                     
        656 CAGCAGCAA
          1 CAGCAGCAA

                     
        665 CAGCAGCAA
          1 CAGCAGCAA

              *  *   
        674 CAACAACAA
          1 CAGCAGCAA

                    *
        683 CAGCAGCAG
          1 CAGCAGCAA

                 
        692 CAGCA
          1 CAGCA

        697 AATAGCGTCT


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.46, C:0.34, G:0.20, T:0.00


Consensus pattern (9 bp):   
CAGCAGCAA
Done.