Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02825.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8752
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31


Found at i:7412 original size:2 final size:2

Alignment explanation


    Indices: 7405--7453  Score: 98
    Period size: 2  Copynumber: 24.5  Consensus size: 2

       7395 ATCTTTTACT

                                                                          
       7405 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                      
       7447 TC TC TC T
          1 TC TC TC T

       7454 AACACACGCT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   47  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.