Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02830.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1586 original size:38 final size:39

Alignment explanation


    Indices: 1515--1592  Score: 104
    Period size: 38  Copynumber: 2.0  Consensus size: 39

       1505 GTACCAGTAC

                             *                     
       1515 TCACTGCAAATGATGAGGTTATTATAAGCTGTAAACGTT
          1 TCACTGCAAATGATGAGATTATTATAAGCTGTAAACGTT

                        *          *    *      *   
       1554 TCACTGCAAATGGT-AGATTATTGTAAGTTGTAAATGTT
          1 TCACTGCAAATGATGAGATTATTATAAGCTGTAAACGTT

             
       1592 T
          1 T

       1593 GGCCATCTGA


Statistics
Matches: 34,  Mismatches: 5, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  38   21  0.62
  39   13  0.38

ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37


Consensus pattern (39 bp):   
TCACTGCAAATGATGAGATTATTATAAGCTGTAAACGTT
Done.