Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02837.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3474
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:3436 original size:34 final size:34

Alignment explanation


    Indices: 3393--3460  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3383 ATGCATTCAG

                                              
       3393 TGTTAGCCAACTAAATGGAAAGAATCAGATATGT
          1 TGTTAGCCAACTAAATGGAAAGAATCAGATATGT

                                              
       3427 TGTTAGCCAACTAAATGGAAAGAATCAGATATGT
          1 TGTTAGCCAACTAAATGGAAAGAATCAGATATGT

       3461 GATGCCTTTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26


Consensus pattern (34 bp):   
TGTTAGCCAACTAAATGGAAAGAATCAGATATGT
Done.