Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02848.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3865
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36


Found at i:1748 original size:19 final size:19

Alignment explanation


    Indices: 1712--1749  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1702 TTTTTATAAG

                         *     
       1712 GGTGTTTTTGTTTTTTGTT
          1 GGTGTTTTTGTTTGTTGTT

                                
       1731 GGTGTTTTATG-TTGTTGTT
          1 GGTGTTTT-TGTTTGTTGTT

       1750 TTGATGATGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19   15  0.88
  20    2  0.12

ACGTcount: A:0.03, C:0.00, G:0.29, T:0.68


Consensus pattern (19 bp):   
GGTGTTTTTGTTTGTTGTT
Done.