Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02872.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1818
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34


Found at i:1692 original size:7 final size:7

Alignment explanation


    Indices: 1671--1714  Score: 70
    Period size: 7  Copynumber: 6.1  Consensus size: 7

       1661 TGTTTGACAT

                    
       1671 TGATGATA
          1 TGAT-ATA

              *    
       1679 TGGTATA
          1 TGATATA

                   
       1686 TGATATA
          1 TGATATA

                   
       1693 TGATATA
          1 TGATATA

                   
       1700 TGATATA
          1 TGATATA

                   
       1707 TGATATA
          1 TGATATA

             
       1714 T
          1 T

       1715 ACATACATAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
   7   31  0.91
   8    3  0.09

ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43


Consensus pattern (7 bp):   
TGATATA

Done.