Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02872.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33


Found at i:1790 original size:7 final size:7

Alignment explanation


    Indices: 1769--1812  Score: 70
    Period size: 7  Copynumber: 6.1  Consensus size: 7

       1759 TGTTTGACAT

                    
       1769 TGATGATA
          1 TGAT-ATA

              *    
       1777 TGGTATA
          1 TGATATA

                   
       1784 TGATATA
          1 TGATATA

                   
       1791 TGATATA
          1 TGATATA

                   
       1798 TGATATA
          1 TGATATA

                   
       1805 TGATATA
          1 TGATATA

             
       1812 T
          1 T

       1813 ACATACATAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
   7   31  0.91
   8    3  0.09

ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43


Consensus pattern (7 bp):   
TGATATA

Done.