Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02872.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35


Found at i:1098 original size:164 final size:163

Alignment explanation


    Indices: 827--1147  Score: 543
    Period size: 164  Copynumber: 2.0  Consensus size: 163

        817 TTGTTTTCCT

                         *           *                            *   *      
        827 ATAATTTTAACTGTATATATGCAAGGCATTAGCTTTTGATTGTTTCAACCATTATATTTATCGAT
          1 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT

                      *             *                         *              
        892 TATGTCTTTAGTACTTAATTATTATGTGTCAGCTTCATTAGTATGGGATGGCAATAATGATTTTT
         66 TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGA-TTTT

                                 *            
        957 TTTATGTGTATGAATGCAAATTTTTATGCCGATA
        130 TTTATGTGTATGAATGCAAATGTTTATGCCGATA

                                                                         *   
        991 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATTGAT
          1 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT

                                            *                                
       1056 TATGTCTTTACTACTTAATTATTACGTGTCAGTTTCATTAGTATGGGATGCCAATAATGATTTTT
         66 TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGATTTTT

                                       
       1121 TTATGTGTATGAATGCAAATGTTTATG
        131 TTATGTGTATGAATGCAAATGTTTATG

       1148 TGACTGCTTG


Statistics
Matches: 147,  Mismatches: 10, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
 163   31  0.21
 164  116  0.79

ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45


Consensus pattern (163 bp):   
ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT
TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGATTTTT
TTATGTGTATGAATGCAAATGTTTATGCCGATA

Found at i:2279 original size:7 final size:7

Alignment explanation


    Indices: 2258--2301  Score: 70
    Period size: 7  Copynumber: 6.1  Consensus size: 7

       2248 TGTTTGACAT

                    
       2258 TGATGATA
          1 TGAT-ATA

              *    
       2266 TGGTATA
          1 TGATATA

                   
       2273 TGATATA
          1 TGATATA

                   
       2280 TGATATA
          1 TGATATA

                   
       2287 TGATATA
          1 TGATATA

                   
       2294 TGATATA
          1 TGATATA

             
       2301 T
          1 T

       2302 ACATACATAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
   7   31  0.91
   8    3  0.09

ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43


Consensus pattern (7 bp):   
TGATATA

Done.