Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02873.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 527

Length: 879
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34


Found at i:638 original size:6 final size:6

Alignment explanation


    Indices: 627--654  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        617 GTCAATTAAT

                                            
        627 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA

        655 CATTGTTTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Done.