Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02876.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4058
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:923 original size:45 final size:42

Alignment explanation


    Indices: 837--921  Score: 125
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        827 AAGTAACCCG

                                *  *                  
        837 CAATCATCCTCCACTTATCAGCAGCCTGCACAATATCCTCCT
          1 CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT

                        *               *       *     
        879 CAATCATCCTCCTCTTATCAACAACCTGGACAATATACTCCT
          1 CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT

             
        921 C
          1 C

        922 CTGAAAGTAA


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.28, C:0.39, G:0.06, T:0.27


Consensus pattern (42 bp):   
CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT

Found at i:1158 original size:126 final size:126

Alignment explanation


    Indices: 927--1184  Score: 392
    Period size: 126  Copynumber: 2.0  Consensus size: 126

        917 TCCTCCTGAA

                          *             *                   *                
        927 AGTAATTCTGAACTTCTCTCCACACACATTAGCTTCTCTGGTCATAACCGGCAAGACAGTACAAG
          1 AGTAATTCTGAACTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG

                                      **                    *        *  *
        992 TTCCTTAGCAGCAAATACGGGAAGTGTTTCACCTCTTTACCCGCGTTTGGATCATCAGTTG
         66 TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCGCGTTTAGATCATCAATTC

                       *        *                                            
       1053 AGTAATTCTGAGCTCCTCTCTACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
          1 AGTAATTCTGAACTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG

                            *                            *                
       1118 TTCCTTAGCAGCAAATTCGGGAAGTGCCTCACCTGC-TTACCCGCTTTTAGATCATCAATTC
         66 TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCT-CTTTACCCGCGTTTAGATCATCAATTC

                  
       1179 AGTAAT
          1 AGTAAT

       1185 ATGCATTTGT


Statistics
Matches: 119,  Mismatches: 12, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
 126  118  0.99
 127    1  0.01

ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29


Consensus pattern (126 bp):   
AGTAATTCTGAACTCCTCTCCACACACAATAGCTTCTCTGGTCATAACAGGCAAGACAGTACAAG
TTCCTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCGCGTTTAGATCATCAATTC
Done.