Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02887.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1898
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40


Found at i:39 original size:6 final size:6

Alignment explanation


    Indices: 28--61  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         18 CTTCTCCCAT

                                                   
         28 TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCC
          1 TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCC

         62 GGTTGTTTGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35


Consensus pattern (6 bp):   
TTCCCC

Found at i:147 original size:25 final size:26

Alignment explanation


    Indices: 119--172  Score: 83
    Period size: 25  Copynumber: 2.1  Consensus size: 26

        109 AGGCTCATTC

                        *           * 
        119 TCCTTCTTCCGTTCTTCAT-TTCTTT
          1 TCCTTCTTCCGTACTTCATCTTCTCT

                                      
        144 TCCTTCTTCCGTACTTCATCTTCTCT
          1 TCCTTCTTCCGTACTTCATCTTCTCT

               
        170 TCC
          1 TCC

        173 AGGTAAAAGT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  25   18  0.69
  26    8  0.31

ACGTcount: A:0.06, C:0.37, G:0.04, T:0.54


Consensus pattern (26 bp):   
TCCTTCTTCCGTACTTCATCTTCTCT
Done.