Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02910.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 898
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:425 original size:15 final size:14

Alignment explanation


    Indices: 399--434  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 14

        389 CTTTATAGCC

                           
        399 GAAAACAGAGAAAAA
          1 GAAAA-AGAGAAAAA

                           
        414 TGAAAAAGAGAAAAA
          1 -GAAAAAGAGAAAAA

                  
        429 GAAAAA
          1 GAAAAA

        435 AATACAAATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  14    6  0.30
  15    9  0.45
  16    5  0.25

ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03


Consensus pattern (14 bp):   
GAAAAAGAGAAAAA

Done.