Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02915.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30


Found at i:170 original size:12 final size:12

Alignment explanation


    Indices: 163--195  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        153 TTAGCCGTCG

                        
        163 CCGCAGCCGCCA
          1 CCGCAGCCGCCA

                        
        175 CCGCAGCCGCCA
          1 CCGCAGCCGCCA

                *    
        187 CCGCCGCCG
          1 CCGCAGCCG

        196 AAGCAGAGTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.12, C:0.61, G:0.27, T:0.00


Consensus pattern (12 bp):   
CCGCAGCCGCCA
Done.