Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02928.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1774
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:1634 original size:23 final size:23

Alignment explanation


    Indices: 1608--1653  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1598 AGGATTCAAG

                                   
       1608 CTTATTCTGTTATAAGATGTACC
          1 CTTATTCTGTTATAAGATGTACC

                  *                
       1631 CTTATTTTGTTATAAGATGTACC
          1 CTTATTCTGTTATAAGATGTACC

       1654 TTTGTGAACG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46


Consensus pattern (23 bp):   
CTTATTCTGTTATAAGATGTACC
Done.