Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02929.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2032
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1029 original size:21 final size:21

Alignment explanation


    Indices: 1003--1043  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        993 CATCATCAAC

                                 
       1003 CAAAACTTAAAAAATTCTCAT
          1 CAAAACTTAAAAAATTCTCAT

                                
       1024 CAAAACTTAAAAAATTCTCA
          1 CAAAACTTAAAAAATTCTCA

       1044 GAGTACCATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.54, C:0.20, G:0.00, T:0.27


Consensus pattern (21 bp):   
CAAAACTTAAAAAATTCTCAT
Done.