Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02934.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1890
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26


Found at i:1307 original size:6 final size:6

Alignment explanation


    Indices: 1296--1337  Score: 57
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       1286 TGGCCCCAGC

                                        *      *      *     
       1296 GATGGG GATGGG GATGGG GATGGG TATGGG CATGGG CATGGG
          1 GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG

       1338 TGTCATGGAC


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.17, C:0.05, G:0.60, T:0.19


Consensus pattern (6 bp):   
GATGGG

Done.