Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02940.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3126
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30


Found at i:1039 original size:23 final size:23

Alignment explanation


    Indices: 1009--1055  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        999 AGTTTTGAAC

                           *       
       1009 TTAAAAAATGGCAGATAAAATAG
          1 TTAAAAAATGGCAGAGAAAATAG

                                   
       1032 TTAAAAAATGGCAGAGAAAATAG
          1 TTAAAAAATGGCAGAGAAAATAG

             
       1055 T
          1 T

       1056 ATGGTTGCCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.55, C:0.04, G:0.19, T:0.21


Consensus pattern (23 bp):   
TTAAAAAATGGCAGAGAAAATAG
Done.