Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02940.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4034
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:944 original size:23 final size:23

Alignment explanation


    Indices: 914--960  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        904 AGTTTTGAAC

                           *       
        914 TTAAAAAATGGCAGATAAAATAG
          1 TTAAAAAATGGCAGAGAAAATAG

                                   
        937 TTAAAAAATGGCAGAGAAAATAG
          1 TTAAAAAATGGCAGAGAAAATAG

             
        960 T
          1 T

        961 ATGGTTGCCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.55, C:0.04, G:0.19, T:0.21


Consensus pattern (23 bp):   
TTAAAAAATGGCAGAGAAAATAG

Found at i:3425 original size:35 final size:35

Alignment explanation


    Indices: 3386--3454  Score: 138
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       3376 TTGTCCACGG

                                               
       3386 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
          1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA

                                              
       3421 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT
          1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT

       3455 CTTTATTGAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   34  1.00

ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43


Consensus pattern (35 bp):   
TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
Done.