Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02953.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4215
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:2204 original size:69 final size:66

Alignment explanation


    Indices: 2094--2224  Score: 217
    Period size: 69  Copynumber: 1.9  Consensus size: 66

       2084 GCAGGCCAGC

                                    *         *                              
       2094 TGTTTTTCTAAAAAAAAAAAAAAAGCTTTACTCTTTTTGCAACCGGACCATTATTTTCCTTGCTT
          1 TGTTTTTCTAAAAAAAAAAAAAAAACTTTACTCTCTTTGCAACCGGACCATTATTTTCCTTGCTT

             
       2159 T
         66 T

                                                                             
       2160 TGTTTTTCTAAAAAAATAAAAAAATTAACTTTACTCTCTTTGCAACCGGACCATTATTTTCCTTG
          1 TGTTTTTCTAAAAAAA-AAAAAAA--AACTTTACTCTCTTTGCAACCGGACCATTATTTTCCTTG

       2225 ATTTCAAAGT


Statistics
Matches: 60,  Mismatches: 2, Indels: 3
        0.92            0.03        0.05

Matches are distributed among these distances:
  66   16  0.27
  67    7  0.12
  69   37  0.62

ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40


Consensus pattern (66 bp):   
TGTTTTTCTAAAAAAAAAAAAAAAACTTTACTCTCTTTGCAACCGGACCATTATTTTCCTTGCTT
T
Done.