Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02965.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33


Found at i:709 original size:96 final size:95

Alignment explanation


    Indices: 541--774  Score: 414
    Period size: 96  Copynumber: 2.5  Consensus size: 95

        531 ACTCTTGGGT

                                                                     *  *    
        541 GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGATTTGGTGAGGTAAGCCAACATCTTTTTCTCT
          1 GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGATTTGGTGAGGTAAGCCAACATCTCTTGCTCT

                       *                  
        606 CCTCTTTAACCGCCATTTATTCAATTCTAC
         66 CCTCTTTAACCCCCATTTATTCAATTCTAC

                *                                                            
        636 GTTTCGTGGCAATAAACAAGATTGTGGGTCTCGATTTTGGTGAGGTAAGCCAACATCTCTTGCTC
          1 GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGA-TTTGGTGAGGTAAGCCAACATCTCTTGCTC

                           *               
        701 TCCTCTTTAACCCCCGTTTATTCAATTCTAC
         65 TCCTCTTTAACCCCCATTTATTCAATTCTAC

                                                       
        732 GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGATTTGGTGAG
          1 GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGATTTGGTGAG

        775 TGTTGGCTGA


Statistics
Matches: 132,  Mismatches: 6, Indels: 2
        0.94            0.04        0.01

Matches are distributed among these distances:
  95   42  0.32
  96   90  0.68

ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36


Consensus pattern (95 bp):   
GTTTTGTGGCAATAAACAAGATTGTGGGTCTCGATTTGGTGAGGTAAGCCAACATCTCTTGCTCT
CCTCTTTAACCCCCATTTATTCAATTCTAC
Done.