Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02975.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1351
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37


Found at i:533 original size:28 final size:28

Alignment explanation


    Indices: 501--558  Score: 116
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        491 TTACCAAGTA

                                        
        501 TTGAATACAGGGTATAATGATGAAACTC
          1 TTGAATACAGGGTATAATGATGAAACTC

                                        
        529 TTGAATACAGGGTATAATGATGAAACTC
          1 TTGAATACAGGGTATAATGATGAAACTC

              
        557 TT
          1 TT

        559 TCTCTTGTAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   30  1.00

ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31


Consensus pattern (28 bp):   
TTGAATACAGGGTATAATGATGAAACTC
Done.