Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02991.F10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4751
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:4184 original size:33 final size:33

Alignment explanation


    Indices: 4111--4187  Score: 91
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       4101 AAAATCCTTG

                                           **
       4111 CCGCCTCCACCTCCAAAAACCATGCAGACTCTG
          1 CCGCCTCCACCTCCAAAAACCATGCAGACTCCA

              *     *   *            * *     
       4144 CCACCTCCGCCTTCAAAAACCATGCTGCCTCCA
          1 CCGCCTCCACCTCCAAAAACCATGCAGACTCCA

                       
       4177 CCGCCTCCACC
          1 CCGCCTCCACC

       4188 CAAGTTCACA


Statistics
Matches: 35,  Mismatches: 9, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.23, C:0.51, G:0.10, T:0.16


Consensus pattern (33 bp):   
CCGCCTCCACCTCCAAAAACCATGCAGACTCCA
Done.