Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03024.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2139
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:1986 original size:18 final size:19

Alignment explanation


    Indices: 1942--1986  Score: 56
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       1932 CTGATTTTTC

                              *
       1942 TTCCTTTTGTTTTTGGGGT
          1 TTCCTTTTGTTTTTGGGGA

              **               
       1961 TTAATTTTGTTTTT-GGGA
          1 TTCCTTTTGTTTTTGGGGA

                    
       1979 TTCCTTTT
          1 TTCCTTTT

       1987 TCTTTCCATT


Statistics
Matches: 21,  Mismatches: 5, Indels: 1
        0.78            0.19        0.04

Matches are distributed among these distances:
  18    9  0.43
  19   12  0.57

ACGTcount: A:0.07, C:0.09, G:0.20, T:0.64


Consensus pattern (19 bp):   
TTCCTTTTGTTTTTGGGGA

Done.