Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03025.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 498

Length: 831
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34


Found at i:266 original size:24 final size:24

Alignment explanation


    Indices: 237--284  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        227 GATGGTTGAA

                   *                
        237 TGATGATTTTGTGAAATAAAATAG
          1 TGATGATATTGTGAAATAAAATAG

                                    
        261 TGATGATATTGTGAAATAAAATAG
          1 TGATGATATTGTGAAATAAAATAG

        285 CGTTTGGAAG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35


Consensus pattern (24 bp):   
TGATGATATTGTGAAATAAAATAG
Done.