Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03040.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4523
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27


Found at i:46 original size:6 final size:6

Alignment explanation


    Indices: 16--55  Score: 55
    Period size: 6  Copynumber: 6.8  Consensus size: 6

          6 ACCGAAGATT

                           *                        *      
         16 AGAAAA A-AAAA AAAAAA AGAAAA AGAAAA AGAAAG AGAAA
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAA

         56 CATAAAAAAG


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   5    5  0.16
   6   26  0.84

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Done.