Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00426.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4294
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:824 original size:43 final size:43

Alignment explanation


    Indices: 732--817  Score: 172
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        722 TTGCAGTAAG

                                                       
        732 TCTCCATGACAAATACAAAATTTGTTATTGTAAACCATTCTTT
          1 TCTCCATGACAAATACAAAATTTGTTATTGTAAACCATTCTTT

                                                       
        775 TCTCCATGACAAATACAAAATTTGTTATTGTAAACCATTCTTT
          1 TCTCCATGACAAATACAAAATTTGTTATTGTAAACCATTCTTT

        818 CTTCCATCTG


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   43  1.00

ACGTcount: A:0.35, C:0.19, G:0.07, T:0.40


Consensus pattern (43 bp):   
TCTCCATGACAAATACAAAATTTGTTATTGTAAACCATTCTTT
Done.