Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03056.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7028
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1984 original size:23 final size:23

Alignment explanation


    Indices: 1954--1999  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1944 CTGTGATGCT

                                   
       1954 ATAGATCCATTCATGTAAATGTC
          1 ATAGATCCATTCATGTAAATGTC

                                   
       1977 ATAGATCCATTCATGTAAATGTC
          1 ATAGATCCATTCATGTAAATGTC

       2000 CTTAACATCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Consensus pattern (23 bp):   
ATAGATCCATTCATGTAAATGTC
Done.