Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03097.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5221
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:2838 original size:24 final size:24

Alignment explanation


    Indices: 2811--3029  Score: 303
    Period size: 24  Copynumber: 9.0  Consensus size: 24

       2801 CCAGCAGCGT

                      *    *        
       2811 CAGTTGGAGCTTCAGAGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

                                    
       2835 CAGTTGGAGCATCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

                                    
       2859 CAGTTGGAGCATCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

                                    
       2883 CAGTTGGAGCATCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

              *                     
       2907 CAATTGGAGCATCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

              *                     
       2931 CAATTGGAGCATCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

              *       *             
       2955 CAATTGGAGCTTCAGCGGCAGCAG
          1 CAGTTGGAGCATCAGCGGCAGCAG

                    * *     *   *     
       2979 CAGTTGGAACTTCAGCAGCATCAAAG
          1 CAGTTGGAGCATCAGCGGCAGC--AG

                     * *             
       3005 ACAGTTGGAACTTCAGCGGCAGCAG
          1 -CAGTTGGAGCATCAGCGGCAGCAG

       3030 GAGCTTCGTC


Statistics
Matches: 182,  Mismatches: 10, Indels: 5
        0.92            0.05        0.03

Matches are distributed among these distances:
  24  158  0.87
  25    2  0.01
  26    2  0.01
  27   20  0.11

ACGTcount: A:0.27, C:0.24, G:0.34, T:0.15


Consensus pattern (24 bp):   
CAGTTGGAGCATCAGCGGCAGCAG

Done.