Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03109.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32


Found at i:667 original size:20 final size:21

Alignment explanation


    Indices: 642--681  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        632 CATCGTCCGG

                  *              
        642 TTTTCTTTTTCTTTT-TTTGC
          1 TTTTCTATTTCTTTTCTTTGC

                      *         
        662 TTTTCTATTTGTTTTCTTTG
          1 TTTTCTATTTCTTTTCTTTG

        682 TTTCCGGCGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20   13  0.76
  21    4  0.24

ACGTcount: A:0.03, C:0.12, G:0.07, T:0.78


Consensus pattern (21 bp):   
TTTTCTATTTCTTTTCTTTGC
Done.