Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03128.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3260
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34


Found at i:2368 original size:33 final size:33

Alignment explanation


    Indices: 2326--2394  Score: 129
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2316 TCATAAGCTG

                                             
       2326 TTTGTGACAGCAATGCCTGACCTTATTTTTGGT
          1 TTTGTGACAGCAATGCCTGACCTTATTTTTGGT

                        *                    
       2359 TTTGTGACAGCAGTGCCTGACCTTATTTTTGGT
          1 TTTGTGACAGCAATGCCTGACCTTATTTTTGGT

               
       2392 TTT
          1 TTT

       2395 CTTTCTCTTG


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.16, C:0.17, G:0.22, T:0.45


Consensus pattern (33 bp):   
TTTGTGACAGCAATGCCTGACCTTATTTTTGGT
Done.