Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03135.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 599

Length: 999
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:859 original size:22 final size:22

Alignment explanation


    Indices: 834--885  Score: 95
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        824 TTTTCCATTC

                 *                
        834 ATCGTTTTCCCGAAACTAGTTT
          1 ATCGTCTTCCCGAAACTAGTTT

                                  
        856 ATCGTCTTCCCGAAACTAGTTT
          1 ATCGTCTTCCCGAAACTAGTTT

                    
        878 ATCGTCTT
          1 ATCGTCTT

        886 GTTTTTAGCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  22   29  1.00

ACGTcount: A:0.21, C:0.25, G:0.13, T:0.40


Consensus pattern (22 bp):   
ATCGTCTTCCCGAAACTAGTTT
Done.