Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03145.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:1399 original size:13 final size:13

Alignment explanation


    Indices: 1381--1405  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1371 TGACTTAATT

                         
       1381 TGTTTTCTGTTTC
          1 TGTTTTCTGTTTC

                        
       1394 TGTTTTCTGTTT
          1 TGTTTTCTGTTT

       1406 TCAGTTATGC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.12, G:0.16, T:0.72


Consensus pattern (13 bp):   
TGTTTTCTGTTTC
Done.