Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03155.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4092
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30


Found at i:985 original size:3 final size:3

Alignment explanation


    Indices: 977--1022  Score: 56
    Period size: 3  Copynumber: 15.3  Consensus size: 3

        967 CAATGCTTTT

                                *   *   *   *                            
        977 GCA GCA GCA GCA GCA ACA ACA ACA ACA GCA GCA GCA GCA GCA GCA G
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G

       1023 TTCCTCCAAT


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.41, C:0.33, G:0.26, T:0.00


Consensus pattern (3 bp):   
GCA

Done.