Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03177.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4510
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33


Found at i:2676 original size:103 final size:103

Alignment explanation


    Indices: 2543--2748  Score: 412
    Period size: 103  Copynumber: 2.0  Consensus size: 103

       2533 ACCTTGTTCG

                                                                             
       2543 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
          1 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT

                                                  
       2608 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
         66 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA

                                                                             
       2646 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
          1 ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT

                                                  
       2711 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
         66 GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA

       2749 CTTAATGAGT


Statistics
Matches: 103,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 103  103  1.00

ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40


Consensus pattern (103 bp):   
ATACTAGTTATACATTTTAAGTTCTACCACACAAAAGTCTCATTGAGAATTGCATGGTTACTTCT
GTCTCTCGTATTTCTGCATTTAAGCTTTGACCAGTTTA
Done.