Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03197.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 486

Length: 810
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:561 original size:51 final size:51

Alignment explanation


    Indices: 498--600  Score: 154
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        488 GAAACTCTGT

                           *     *             *                
        498 CGGATCCGATTTCTCGTCAAACGTATGATTATGAATTGG-GCTTGGTTAATC
          1 CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAG-TTGGTTAATC

                                    *                          
        549 CGGATCCGATTTCTCATCAAAAGTTTGATTATGAAATGGAGTTGGTTAATC
          1 CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAGTTGGTTAATC

             
        600 C
          1 C

        601 AATGGGGTTT


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
  51   46  0.98
  52    1  0.02

ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35


Consensus pattern (51 bp):   
CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAGTTGGTTAATC
Done.