Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g03241.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331
Length: 552
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Found at i:421 original size:187 final size:187
Alignment explanation
Indices: 106--480 Score: 750
Period size: 187 Copynumber: 2.0 Consensus size: 187
96 CTGACCTGCC
106 CGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCTAGAGT
1 CGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCTAGAGT
171 GGAAGGCACTGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGG
66 GGAAGGCACTGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGG
236 ATAACAGGCTGTTGTCACGTGGATCCAATATGGTTCCATGGGCCGATCCTACTTGGA
131 ATAACAGGCTGTTGTCACGTGGATCCAATATGGTTCCATGGGCCGATCCTACTTGGA
293 CGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCTAGAGT
1 CGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCTAGAGT
358 GGAAGGCACTGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGG
66 GGAAGGCACTGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGG
423 ATAACAGGCTGTTGTCACGTGGATCCAATATGGTTCCATGGGCCGATCCTACTTGGA
131 ATAACAGGCTGTTGTCACGTGGATCCAATATGGTTCCATGGGCCGATCCTACTTGGA
480 C
1 C
481 AATCAATCAC
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
187 188 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (187 bp):
CGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCTAGAGT
GGAAGGCACTGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGG
ATAACAGGCTGTTGTCACGTGGATCCAATATGGTTCCATGGGCCGATCCTACTTGGA
Done.