Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03241.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 252

Length: 420
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27


Found at i:256 original size:55 final size:55

Alignment explanation


    Indices: 186--301  Score: 232
    Period size: 55  Copynumber: 2.1  Consensus size: 55

        176 GCACTGCGTG

                                                                   
        186 AGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGGATAAC
          1 AGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGGATAAC

                                                                   
        241 AGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGGATAAC
          1 AGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGGATAAC

                  
        296 AGGCTG
          1 AGGCTG

        302 TTGTCACGTG


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   61  1.00

ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20


Consensus pattern (55 bp):   
AGGCTGGTTTCACAGAGCAGCGAAAACTTCCCCCTCTTGGCAGTGGAAGGATAAC
Done.