Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03241.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 265

Length: 443
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27


Found at i:230 original size:78 final size:78

Alignment explanation


    Indices: 101--260  Score: 320
    Period size: 78  Copynumber: 2.1  Consensus size: 78

         91 CACTTCTGAC

                                                                             
        101 CTGCCCGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCT
          1 CTGCCCGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCT

                         
        166 AGAGTGGAAGGCA
         66 AGAGTGGAAGGCA

                                                                             
        179 CTGCCCGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCT
          1 CTGCCCGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCT

                         
        244 AGAGTGGAAGGCA
         66 AGAGTGGAAGGCA

                
        257 CTGC
          1 CTGC

        261 GTGAGGCTGG


Statistics
Matches: 82,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  78   82  1.00

ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24


Consensus pattern (78 bp):   
CTGCCCGTTCCAAGCCAGGAGTTGAGCTATATGTCTTGAGCGAAAGCTCGGGTCTTGTGGCTCCT
AGAGTGGAAGGCA
Done.