Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03275.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4879
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:4218 original size:12 final size:12

Alignment explanation


    Indices: 4201--4241  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       4191 TGCATGTATG

                  *     
       4201 CATACACAAGTA
          1 CATACATAAGTA

                    *   
       4213 CATACATATGTA
          1 CATACATAAGTA

                       *
       4225 CATACATAAGTT
          1 CATACATAAGTA

                 
       4237 CATAC
          1 CATAC

       4242 GCGTACATTC


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27


Consensus pattern (12 bp):   
CATACATAAGTA
Done.