Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03286.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2494
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:179 original size:21 final size:21

Alignment explanation


    Indices: 153--237  Score: 71
    Period size: 21  Copynumber: 4.0  Consensus size: 21

        143 TTCTATCTTC

                         *       
        153 TTCTCCGCCGTCTTCAACCCT
          1 TTCTCCGCCGTCTCCAACCCT

                  * *  **** *    
        174 TTCTCCACTGTAAAGATCCCT
          1 TTCTCCGCCGTCTCCAACCCT

            *               *    
        195 CTCTCCGCCGTCTCCAGCCCT
          1 TTCTCCGCCGTCTCCAACCCT

                             *   
        216 TTCTCCGCCGTCTCCAATCCT
          1 TTCTCCGCCGTCTCCAACCCT

             
        237 T
          1 T

        238 CTTTCACGAT


Statistics
Matches: 46,  Mismatches: 18, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
  21   46  1.00

ACGTcount: A:0.12, C:0.46, G:0.11, T:0.32


Consensus pattern (21 bp):   
TTCTCCGCCGTCTCCAACCCT
Done.