Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03295.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33


Found at i:370 original size:50 final size:50

Alignment explanation


    Indices: 312--416  Score: 194
    Period size: 50  Copynumber: 2.1  Consensus size: 50

        302 TTTTAATGTG

                                                              
        312 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT
          1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT

                                              *               
        361 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
          1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT

                  
        411 AGTATT
          1 AGTATT

        417 AGTCATGTAA


Statistics
Matches: 54,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  49    4  0.07
  50   50  0.93

ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40


Consensus pattern (50 bp):   
AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT
Done.