Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03295.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2594
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32


Found at i:1749 original size:50 final size:50

Alignment explanation


    Indices: 1691--1795  Score: 194
    Period size: 50  Copynumber: 2.1  Consensus size: 50

       1681 TTTTAATGTG

                                                              
       1691 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT
          1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT

                                              *               
       1740 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
          1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT

                  
       1790 AGTATT
          1 AGTATT

       1796 AGTCATGTAA


Statistics
Matches: 54,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  49    4  0.07
  50   50  0.93

ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40


Consensus pattern (50 bp):   
AGTATTGTAATATTATGATTTAGCCAAAGGCATTAGCTTGTTATTAAGGT
Done.