Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03298.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3182
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38


Found at i:980 original size:22 final size:22

Alignment explanation


    Indices: 949--991  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        939 TTTGGTACTT

                       *          
        949 GTCTTTATTTTTAAA-AACGGG
          1 GTCTTTATTTTCAAATAACGGG

                                  
        970 GTCTATTATTTTCAAATAACGG
          1 GTCT-TTATTTTCAAATAACGG

        992 TTTTGATAAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21    4  0.21
  22   10  0.53
  23    5  0.26

ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42


Consensus pattern (22 bp):   
GTCTTTATTTTCAAATAACGGG

Found at i:981 original size:21 final size:23

Alignment explanation


    Indices: 949--991  Score: 56
    Period size: 21  Copynumber: 2.0  Consensus size: 23

        939 TTTGGTACTT

                                   
        949 GTCTTTATTTTT-AAA-AACGGG
          1 GTCTTTATTTTTCAAATAACGGG

                                   
        970 GTCTATTA-TTTTCAAATAACGG
          1 GTCT-TTATTTTTCAAATAACGG

        992 TTTTGATAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  21    8  0.42
  22    6  0.32
  23    5  0.26

ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42


Consensus pattern (23 bp):   
GTCTTTATTTTTCAAATAACGGG
Done.