Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03303.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3407
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:3222 original size:14 final size:14

Alignment explanation


    Indices: 3203--3232  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       3193 TGAAAAAAGT

                          
       3203 AAGAATCTGTTGTA
          1 AAGAATCTGTTGTA

                          
       3217 AAGAATCTGTTGTA
          1 AAGAATCTGTTGTA

              
       3231 AA
          1 AA

       3233 TCACGGTTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33


Consensus pattern (14 bp):   
AAGAATCTGTTGTA
Done.