Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03308.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3180
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24


Found at i:965 original size:48 final size:48

Alignment explanation


    Indices: 880--1072  Score: 205
    Period size: 48  Copynumber: 4.0  Consensus size: 48

        870 TGGCGGAAAT

                         *       *                             
        880 GGAAGATGAA-CCGAGGGTAAACAAACCAA-A-AATTCAAGACCAACTAGA
          1 GGAAGATGAACCCAAGGG-AACCAAA-CAACAGAA-TCAAGACCAACTAGA

               *                         *                  
        928 GGAGGATGAACCCAAGGGAACCAAACAACCGAATCAAGACCAACTAGA
          1 GGAAGATGAACCCAAGGGAACCAAACAACAGAATCAAGACCAACTAGA

                      * *     *                     *        
        976 GGAAGATGAATCGAAGGGGACCAAACAACTA-AATCAAGATCAACTAGA
          1 GGAAGATGAACCCAAGGGAACCAAACAAC-AGAATCAAGACCAACTAGA

             *                  *     *         *       *   
       1024 GCAAGATGAACCCAAGGGAAACAAACTACAGAATCATGACCAACAAGA
          1 GGAAGATGAACCCAAGGGAACCAAACAACAGAATCAAGACCAACTAGA

             
       1072 G
          1 G

       1073 TCGCAGGTGC


Statistics
Matches: 121,  Mismatches: 19, Indels: 10
        0.81            0.13        0.07

Matches are distributed among these distances:
  47    4  0.03
  48  109  0.90
  49    8  0.07

ACGTcount: A:0.48, C:0.21, G:0.22, T:0.09


Consensus pattern (48 bp):   
GGAAGATGAACCCAAGGGAACCAAACAACAGAATCAAGACCAACTAGA
Done.